Selection against recombinant hybrids maintains reproductive isolation in hybridizing Populus species despite F1 fertility and recurrent gene flow.
Identifieur interne : 001679 ( Main/Exploration ); précédent : 001678; suivant : 001680Selection against recombinant hybrids maintains reproductive isolation in hybridizing Populus species despite F1 fertility and recurrent gene flow.
Auteurs : Camille Christe [Suisse] ; Kai N. Stölting [Suisse] ; Luisa Bresadola [Suisse] ; Barbara Fussi [Allemagne] ; Berthold Heinze [Autriche] ; Daniel Wegmann [Suisse] ; Christian Lexer [Suisse, Autriche]Source :
- Molecular ecology [ 1365-294X ] ; 2016.
Descripteurs français
- KwdFr :
- ADN des chloroplastes (génétique), ADN des plantes (génétique), Analyse de séquence d'ADN (MeSH), Déséquilibre de liaison (MeSH), Flux des gènes (MeSH), Fécondité (MeSH), Génome végétal (MeSH), Génotype (MeSH), Génétique des populations (MeSH), Haplotypes (MeSH), Hybridation génétique (MeSH), Isolement reproductif (MeSH), Polymorphisme de nucléotide simple (MeSH), Populus (génétique), Sélection génétique (MeSH).
- MESH :
- génétique : ADN des chloroplastes, ADN des plantes, Populus.
- Analyse de séquence d'ADN, Déséquilibre de liaison, Flux des gènes, Fécondité, Génome végétal, Génotype, Génétique des populations, Haplotypes, Hybridation génétique, Isolement reproductif, Polymorphisme de nucléotide simple, Sélection génétique.
English descriptors
- KwdEn :
- DNA, Chloroplast (genetics), DNA, Plant (genetics), Fertility (MeSH), Gene Flow (MeSH), Genetics, Population (MeSH), Genome, Plant (MeSH), Genotype (MeSH), Haplotypes (MeSH), Hybridization, Genetic (MeSH), Linkage Disequilibrium (MeSH), Polymorphism, Single Nucleotide (MeSH), Populus (genetics), Reproductive Isolation (MeSH), Selection, Genetic (MeSH), Sequence Analysis, DNA (MeSH).
- MESH :
- chemical , genetics : DNA, Chloroplast, DNA, Plant.
- genetics : Populus.
- Fertility, Gene Flow, Genetics, Population, Genome, Plant, Genotype, Haplotypes, Hybridization, Genetic, Linkage Disequilibrium, Polymorphism, Single Nucleotide, Reproductive Isolation, Selection, Genetic, Sequence Analysis, DNA.
Abstract
Natural hybrid zones have proven to be precious tools for understanding the origin and maintenance of reproductive isolation (RI) and therefore species. Most available genomic studies of hybrid zones using whole- or partial-genome resequencing approaches have focused on comparisons of the parental source populations involved in genome admixture, rather than exploring fine-scale patterns of chromosomal ancestry across the full admixture gradient present between hybridizing species. We have studied three well-known European 'replicate' hybrid zones of Populus alba and P. tremula, two widespread, ecologically divergent forest trees, using up to 432 505 single-nucleotide polymorphisms (SNPs) from restriction site-associated DNA (RAD) sequencing. Estimates of fine-scale chromosomal ancestry, genomic divergence and differentiation across all 19 poplar chromosomes revealed strikingly contrasting results, including an unexpected preponderance of F1 hybrids in the centre of genomic clines on the one hand, and genomically localized, spatially variable shared variants consistent with ancient introgression between the parental species on the other. Genetic ancestry had a significant effect on survivorship of hybrid seedlings in a common garden trial, pointing to selection against early-generation recombinants. Our results indicate a role for selection against recombinant genotypes in maintaining RI in the face of apparent F1 fertility, consistent with the intragenomic 'coadaptation' model of barriers to introgression upon secondary contact. Whole-genome resequencing of hybridizing populations will clarify the roles of specific genetic pathways in RI between these model forest trees and may reveal which loci are affected most strongly by its cyclic breakdown.
DOI: 10.1111/mec.13587
PubMed: 26880192
Affiliations:
- Allemagne, Autriche, Suisse
- Canton de Fribourg, Vienne (Autriche)
- Fribourg, Vienne (Autriche)
- Université de Fribourg
Links toward previous steps (curation, corpus...)
Le document en format XML
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(MeSH)</term><term>Genome, Plant (MeSH)</term><term>Genotype (MeSH)</term><term>Haplotypes (MeSH)</term><term>Hybridization, Genetic (MeSH)</term><term>Linkage Disequilibrium (MeSH)</term><term>Polymorphism, Single Nucleotide (MeSH)</term><term>Populus (genetics)</term><term>Reproductive Isolation (MeSH)</term><term>Selection, Genetic (MeSH)</term><term>Sequence Analysis, DNA (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN des chloroplastes (génétique)</term><term>ADN des plantes (génétique)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Déséquilibre de liaison (MeSH)</term><term>Flux des gènes (MeSH)</term><term>Fécondité (MeSH)</term><term>Génome végétal (MeSH)</term><term>Génotype (MeSH)</term><term>Génétique des populations (MeSH)</term><term>Haplotypes (MeSH)</term><term>Hybridation génétique (MeSH)</term><term>Isolement reproductif (MeSH)</term><term>Polymorphisme de nucléotide simple (MeSH)</term><term>Populus (génétique)</term><term>Sélection génétique (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Chloroplast</term><term>DNA, Plant</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN des chloroplastes</term><term>ADN des plantes</term><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Fertility</term><term>Gene Flow</term><term>Genetics, Population</term><term>Genome, Plant</term><term>Genotype</term><term>Haplotypes</term><term>Hybridization, Genetic</term><term>Linkage Disequilibrium</term><term>Polymorphism, Single Nucleotide</term><term>Reproductive Isolation</term><term>Selection, Genetic</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Déséquilibre de liaison</term><term>Flux des gènes</term><term>Fécondité</term><term>Génome végétal</term><term>Génotype</term><term>Génétique des populations</term><term>Haplotypes</term><term>Hybridation génétique</term><term>Isolement reproductif</term><term>Polymorphisme de nucléotide simple</term><term>Sélection génétique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Natural hybrid zones have proven to be precious tools for understanding the origin and maintenance of reproductive isolation (RI) and therefore species. Most available genomic studies of hybrid zones using whole- or partial-genome resequencing approaches have focused on comparisons of the parental source populations involved in genome admixture, rather than exploring fine-scale patterns of chromosomal ancestry across the full admixture gradient present between hybridizing species. We have studied three well-known European 'replicate' hybrid zones of Populus alba and P. tremula, two widespread, ecologically divergent forest trees, using up to 432 505 single-nucleotide polymorphisms (SNPs) from restriction site-associated DNA (RAD) sequencing. Estimates of fine-scale chromosomal ancestry, genomic divergence and differentiation across all 19 poplar chromosomes revealed strikingly contrasting results, including an unexpected preponderance of F1 hybrids in the centre of genomic clines on the one hand, and genomically localized, spatially variable shared variants consistent with ancient introgression between the parental species on the other. Genetic ancestry had a significant effect on survivorship of hybrid seedlings in a common garden trial, pointing to selection against early-generation recombinants. Our results indicate a role for selection against recombinant genotypes in maintaining RI in the face of apparent F1 fertility, consistent with the intragenomic 'coadaptation' model of barriers to introgression upon secondary contact. Whole-genome resequencing of hybridizing populations will clarify the roles of specific genetic pathways in RI between these model forest trees and may reveal which loci are affected most strongly by its cyclic breakdown.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26880192</PMID><DateCompleted><Year>2017</Year><Month>05</Month><Day>04</Day></DateCompleted><DateRevised><Year>2018</Year><Month>08</Month><Day>08</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1365-294X</ISSN><JournalIssue CitedMedium="Internet"><Volume>25</Volume><Issue>11</Issue><PubDate><Year>2016</Year><Month>Jun</Month></PubDate></JournalIssue><Title>Molecular ecology</Title><ISOAbbreviation>Mol Ecol</ISOAbbreviation></Journal><ArticleTitle>Selection against recombinant hybrids maintains reproductive isolation in hybridizing Populus species despite F1 fertility and recurrent gene flow.</ArticleTitle><Pagination><MedlinePgn>2482-98</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/mec.13587</ELocationID><Abstract><AbstractText>Natural hybrid zones have proven to be precious tools for understanding the origin and maintenance of reproductive isolation (RI) and therefore species. Most available genomic studies of hybrid zones using whole- or partial-genome resequencing approaches have focused on comparisons of the parental source populations involved in genome admixture, rather than exploring fine-scale patterns of chromosomal ancestry across the full admixture gradient present between hybridizing species. We have studied three well-known European 'replicate' hybrid zones of Populus alba and P. tremula, two widespread, ecologically divergent forest trees, using up to 432 505 single-nucleotide polymorphisms (SNPs) from restriction site-associated DNA (RAD) sequencing. Estimates of fine-scale chromosomal ancestry, genomic divergence and differentiation across all 19 poplar chromosomes revealed strikingly contrasting results, including an unexpected preponderance of F1 hybrids in the centre of genomic clines on the one hand, and genomically localized, spatially variable shared variants consistent with ancient introgression between the parental species on the other. Genetic ancestry had a significant effect on survivorship of hybrid seedlings in a common garden trial, pointing to selection against early-generation recombinants. Our results indicate a role for selection against recombinant genotypes in maintaining RI in the face of apparent F1 fertility, consistent with the intragenomic 'coadaptation' model of barriers to introgression upon secondary contact. Whole-genome resequencing of hybridizing populations will clarify the roles of specific genetic pathways in RI between these model forest trees and may reveal which loci are affected most strongly by its cyclic breakdown.</AbstractText><CopyrightInformation>© 2016 John Wiley & Sons Ltd.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Christe</LastName><ForeName>Camille</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Fribourg, Chemin du Musée 10, CH-1700, Fribourg, Switzerland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Stölting</LastName><ForeName>Kai N</ForeName><Initials>KN</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Fribourg, Chemin du Musée 10, CH-1700, Fribourg, Switzerland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bresadola</LastName><ForeName>Luisa</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Fribourg, Chemin du Musée 10, CH-1700, Fribourg, Switzerland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fussi</LastName><ForeName>Barbara</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Applied Forest Genetics, Bavarian Office for Forest Seeding and Planting, Forstamtsplatz 1, 83317, Teisendorf, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Heinze</LastName><ForeName>Berthold</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Department of Genetics, Austrian Federal Research and Training Centre for Forests, Natural Hazards and Landscape, Seckendorff-Gudent-Weg 8, A-1130, Vienna, Austria.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wegmann</LastName><ForeName>Daniel</ForeName><Initials>D</Initials><Identifier Source="ORCID">0000-0003-2866-6739</Identifier><AffiliationInfo><Affiliation>Department of Biology, University of Fribourg, Chemin du Musée 10, CH-1700, Fribourg, Switzerland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lexer</LastName><ForeName>Christian</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Fribourg, Chemin du Musée 10, CH-1700, Fribourg, Switzerland.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Botany and Biodiversity Research, University of Vienna, Rennweg 14, A-1030, Vienna, Austria.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>Dryad</DataBankName><AccessionNumberList><AccessionNumber>10.5061/dryad.pj44k</AccessionNumber></AccessionNumberList></DataBank></DataBankList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>03</Month><Day>28</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Mol Ecol</MedlineTA><NlmUniqueID>9214478</NlmUniqueID><ISSNLinking>0962-1083</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D018742">DNA, Chloroplast</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D018744">DNA, Plant</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D018742" MajorTopicYN="N">DNA, Chloroplast</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018744" MajorTopicYN="N">DNA, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005298" MajorTopicYN="N">Fertility</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D051456" MajorTopicYN="Y">Gene Flow</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005828" MajorTopicYN="N">Genetics, Population</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="N">Genome, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006239" MajorTopicYN="N">Haplotypes</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006824" MajorTopicYN="Y">Hybridization, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015810" MajorTopicYN="N">Linkage Disequilibrium</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020641" MajorTopicYN="N">Polymorphism, Single Nucleotide</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D060047" MajorTopicYN="Y">Reproductive Isolation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012641" MajorTopicYN="Y">Selection, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Hybrid zones</Keyword><Keyword MajorTopicYN="Y">Populus</Keyword><Keyword MajorTopicYN="Y">RAD</Keyword><Keyword MajorTopicYN="Y">admixture</Keyword><Keyword MajorTopicYN="Y">common garden</Keyword><Keyword MajorTopicYN="Y">differentiation</Keyword><Keyword MajorTopicYN="Y">divergence</Keyword><Keyword MajorTopicYN="Y">genotyping by sequencing</Keyword><Keyword MajorTopicYN="Y">local genetic ancestry</Keyword><Keyword MajorTopicYN="Y">speciation</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year><Month>09</Month><Day>25</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2016</Year><Month>01</Month><Day>31</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2016</Year><Month>02</Month><Day>02</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2016</Year><Month>2</Month><Day>17</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2016</Year><Month>2</Month><Day>18</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2017</Year><Month>5</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">26880192</ArticleId><ArticleId IdType="doi">10.1111/mec.13587</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Allemagne</li><li>Autriche</li><li>Suisse</li></country><region><li>Canton de Fribourg</li><li>Vienne (Autriche)</li></region><settlement><li>Fribourg</li><li>Vienne (Autriche)</li></settlement><orgName><li>Université de Fribourg</li></orgName></list><tree><country name="Suisse"><region name="Canton de Fribourg"><name sortKey="Christe, Camille" sort="Christe, Camille" uniqKey="Christe C" first="Camille" last="Christe">Camille Christe</name></region><name sortKey="Bresadola, Luisa" sort="Bresadola, Luisa" uniqKey="Bresadola L" first="Luisa" last="Bresadola">Luisa Bresadola</name><name sortKey="Lexer, Christian" sort="Lexer, Christian" uniqKey="Lexer C" first="Christian" last="Lexer">Christian Lexer</name><name sortKey="Stolting, Kai N" sort="Stolting, Kai N" uniqKey="Stolting K" first="Kai N" last="Stölting">Kai N. Stölting</name><name sortKey="Wegmann, Daniel" sort="Wegmann, Daniel" uniqKey="Wegmann D" first="Daniel" last="Wegmann">Daniel Wegmann</name></country><country name="Allemagne"><noRegion><name sortKey="Fussi, Barbara" sort="Fussi, Barbara" uniqKey="Fussi B" first="Barbara" last="Fussi">Barbara Fussi</name></noRegion></country><country name="Autriche"><region name="Vienne (Autriche)"><name sortKey="Heinze, Berthold" sort="Heinze, Berthold" uniqKey="Heinze B" first="Berthold" last="Heinze">Berthold Heinze</name></region><name sortKey="Lexer, Christian" sort="Lexer, Christian" uniqKey="Lexer C" first="Christian" last="Lexer">Christian Lexer</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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